[Symphony] [SPAM] Cannot find SYMPHONY library and headers

Fri Mar 4 20:26:05 EST 2016

Your questions still seem to be more fit for a discussion board with R
experts. I didn't realize it before, but there are quite a few questions
and answers about installing RSymphony in different environments on
StackOverflow and I think you will find an answer there.

http://stackoverflow.com/search?q=RSYMPHONY

One tip I picked up is that might think of installing the package
lpsyphony, which is similar to RSymphony except that it comes with SYMPHONY
pre-installed and is available on RedHat:

http://stackoverflow.com/a/34676867

Hope it helps!

Cheers,

Ted

On Thu, Mar 3, 2016 at 4:00 AM, ♫ <nothingstop at foxmail.com> wrote:

> Hi Ted
> Thanks your feedback.
> i have already installed by two rpm packages,
> coin-or-SYMPHONY-5.6.8-4.fc23.x86_64.rpm
> <http://rpmfind.net/linux/RPM/fedora/devel/rawhide/x86_64/c/coin-or-SYMPHONY-5.6.8-5.fc24.x86_64.html>
> and R-Rsymphony-0.1_14-1-mdv2012.0.i586.rpm
> <http://rpm.pbone.net/index.php3/stat/4/idpl/20429087/dir/mandrake_other/com/R-Rsymphony-0.1_14-1-mdv2012.0.i586.rpm.html> ,
> however they all failed.
>
> [root at server3 data1]# rpm -ivh R-Rsymphony-0.1_14-1-mdv2012.0.i586.rpm
> warning: R-Rsymphony-0.1_14-1-mdv2012.0.i586.rpm: Header V3 DSA/SHA1
> Signature, key ID 26752624: NOKEY
> error: Failed dependencies:
>         libCgl.so.0 is needed by R-Rsymphony-0.1_14-1.i586
>         libClp.so.0 is needed by R-Rsymphony-0.1_14-1.i586
>         libCoinUtils.so.0 is needed by R-Rsymphony-0.1_14-1.i586
>         libOsi.so.0 is needed by R-Rsymphony-0.1_14-1.i586
>         libOsiClp.so.0 is needed by R-Rsymphony-0.1_14-1.i586
>         libSym.so.0 is needed by R-Rsymphony-0.1_14-1.i586
>
> [root at server3 data1]# rpm -ivh coin-or-SYMPHONY-5.6.8-4.fc23.x86_64.rpm
> warning: coin-or-SYMPHONY-5.6.8-4.fc23.x86_64.rpm: Header V3 RSA/SHA256
> Signature, key ID 34ec9cba: NOKEY
> error: Failed dependencies:
>         libCgl.so.1()(64bit) is needed by
> coin-or-SYMPHONY-5.6.8-4.fc23.x86_64
>         libClp.so.1()(64bit) is needed by
> coin-or-SYMPHONY-5.6.8-4.fc23.x86_64
>         libClpSolver.so.1()(64bit) is needed by
> coin-or-SYMPHONY-5.6.8-4.fc23.x86_64
>         libCoinUtils.so.3()(64bit) is needed by
> coin-or-SYMPHONY-5.6.8-4.fc23.x86_64
>         libOsi.so.1()(64bit) is needed by
> coin-or-SYMPHONY-5.6.8-4.fc23.x86_64
>         libOsiClp.so.1()(64bit) is needed by
> coin-or-SYMPHONY-5.6.8-4.fc23.x86_64
>         libc.so.6(GLIBC_2.14)(64bit) is needed by
> coin-or-SYMPHONY-5.6.8-4.fc23.x86_64
>         libgomp.so.1(GOMP_4.0)(64bit) is needed by
> coin-or-SYMPHONY-5.6.8-4.fc23.x86_64
>         libstdc++.so.6(GLIBCXX_3.4.21)(64bit) is needed by
> coin-or-SYMPHONY-5.6.8-4.fc23.x86_64
>
> when install forced using 'rpm -ivh
> R-Rsymphony-0.1_14-1-mdv2012.0.i586.rpm --force --nodeps', Rsmphony install
> successfully.Nervertheless,
> *①install fPortfolio *
> 'R CMD INSTALL fPortfolio_3011.81.tar.gz' throw the same exception as the
> original.
> Error: dependency 'Rsymphony' is not available for package 'fPortfolio'
> * removing '/usr/lib64/R/library/fPortfolio'
>
>
> my R package installed using 'yum install R-core Rdevel',those programes
> distributed to some system directory as below.
> [root at server3 SYMPHONY-5.6.14]# whereis R
> R: /usr/bin/R /usr/lib/R /usr/lib64/R /usr/include/R /usr/share/R
> /usr/share/man/man1/R.1.gz
>
> i install SYMPHONY in /opt/SYMPHONY-5.6.14 of system directory , all the
> process i did as root user.
> at this time, adding prefix when configure by './configure --prefix=/opt/
> SYMPHONY-5.6.14'
> and make && make install. then failed as *①install **fPortfolio *
>
> i have try to copy the directory of '/opt/SYMPHONY-5.6.14' after make &&
> make install to '/usr/lib64/R/library/'
> and rename the directory to Rsymphony, and failded yet as *①install *
> *fPortfolio*
>
> how to tell R where the Rsymphony install ? how to tell Rsymphony where R
> install ? how to associate R and Rsymphony ?  many thanks. :)
>
>
> ------------------ 原始邮件 ------------------
> *发件人:* "Ted Ralphs";<tkralphs at lehigh.edu>;
> *发送时间:* 2016年3月3日(星期四) 凌晨1:56
> *收件人:* "♫"<nothingstop at foxmail.com>;
> *抄送:* "symphony"<symphony at list.coin-or.org>;
> *主题:* Re: [SPAM] Cannot find SYMPHONY library and headers
>
> I'm not sure how the installation process is supposed to go for an R
> package. I would assume that either SYMPHONY needs to be installed
> somewhere that it can be found by R (probably in a system directory) or
> else you need to tell R where SYMPHONY is installed. If you want to install
> SYMPHONY in a system directory, do something like
>
> ./configure --prefix=/usr
>
> You will then need to install as root so be careful! Alternatively, there
> is a SYMPHONY Fedora package. I'm not sure if it would be available on
> RedHat, but maybe. That would be the easiest.
>
> In general, i would think this is a question for the R mailing list, since
> SYMPHONY is building fine.
>
> Ted
>
>
> On Mon, Feb 29, 2016 at 5:51 AM, ♫ <nothingstop at foxmail.com> wrote:
>
>> Dear sir or madam
>> Thanks for your attention for my email.
>> what my purpose is install packages of 'fPortfolio' using 'R CMD INSTALL
>>  fPortfolio_3011.81.tar.gz'(
>> https://cran.r-project.org/src/contrib/fPortfolio_3011.81.tar.gz) ,
>> which dependence Rsymphony, so install Rsymphony firstly.
>> i encounter an exception when i install the packages of 'Rsymphony' using
>> 'R CMD INSTALL Rsymphony_0.1-21.tar.gz'.(
>> https://cran.r-project.org/src/contrib/Rsymphony_0.1-21.tar.gz)
>> the detail information as below:
>> >install.packages("Rsymphony")
>> * installing *source* package ‘Rsymphony’ ... ** package ‘Rsymphony’
>> successfully unpacked and MD5 sums checked Cannot find SYMPHONY libraries
>> and headers. See <https://projects.coin-or.org/SYMPHONY>. ERROR:
>> configuration failed for package ‘Rsymphony’
>> * removing '/usr/lib64/R/library/Rsymphony'
>>
>> and then , i download SYMPHONY-5.6.14.tgz from here
>> <http://www.coin-or.org/download/source/SYMPHONY/SYMPHONY-5.6.14.tgz>.
>> cd SYMPHONY-5.6.14 ./configure make make install
>> during the building period, there is no exception, but when i install
>> fPortfolio again using 'R CMD INSTALL fPortfolio_3011.81.tar.gz'
>> Error: dependency 'Rsymphony' is not available for package 'fPortfolio'
>> * removing '/usr/lib64/R/library/fPortfolio'
>>
>> my server info as below:
>> Description: Red Hat release 6.5
>> Linux version:2.6.32-431.29.2.el6.x86_64
>> R version 3.1.2.
>>
>> Could you give me an hand? i appreciate your help ~
>>
>>
>>
>> Nemo
>>
>
>
>
> --
> Dr. Ted Ralphs
> Professor, Lehigh University
> (610) 628-1280
> ted 'at' lehigh 'dot' edu
> coral.ie.lehigh.edu/~ted <http://coral.ie.lehigh.edu/%7Eted>
>

-- 
Dr. Ted Ralphs
Professor, Lehigh University
(610) 628-1280
ted 'at' lehigh 'dot' edu
coral.ie.lehigh.edu/~ted
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