[Ipopt] ipoptr installation-undefined reference to gxx_personality

Fri Sep 27 17:12:06 EDT 2019

I get version 4.9.3 to all of them, witch fortran as well. What I do not
understand is, the only compiler I have is in Rtools. How can there be a
mismatch if I have only one compiler?

On Fri, Sep 27, 2019 at 1:32 PM Stefan Vigerske <stefan at math.hu-berlin.de>
wrote:

> Hi,
>
> On 9/27/19 8:16 PM, Serdar Altok wrote:
> > I made the library changes. I still get similar errors, so I guess it is
> a
> > compiler compatibility issue. The reason I did everything with Rtools
> > compilers was to make sure I do not run into compatibility issues
> following
> > Don Boyd's note. I am not knowledgable about compilers. How do I check
> > whether the compilers R is using are the same as the ones I compiled?
>
> which gcc, which g++, gcc --version, g++ --version, etc.
>
> Stefan
>
> >
> > For completeness, I copy the latest error message below.
> >
> > g++ -m64 -shared -s -static-libstdc++ -static-libgcc -o ipoptr.dll
> tmp.def
> > ipoptr.o IpoptRNLP.o IpoptRJournal.o -LC:/CoinIpopt/build/x64/lib -lipopt
> > -lcoinmumps -lcoinlapack -lcoinblas -lcoinmetis
> > -LC:/Rtools/mingw_64/lib/gcc/x86_64-w64-mingw32/4.9.3 -lgfortran
> > -LC:/Rtools/mingw_64/x86_64-w64-mingw32/lib -lmingw32 -lmoldname
> -lmingwex
> > -lmsvcrt -lm -lpthread -ladvapi32 -lshell32 -luser32 -lkernel32 -liconv
> > -LC:/Rtools/mingw_64/lib/gcc/x86_64-w64-mingw32/4.9.3 -lgfortran
> -lquadmath
> > -lstdc++ -LC:/PROGRA~1/R/R-32~1.5/bin/x64 -lR
> >
> C:/CoinIpopt/build/x64/lib/libipopt.a(IpIpoptApplication.o):IpIpoptApplication.cpp:(.rdata$_ZTIN5Ipopt16ReferencedObjectE[_ZTIN5Ipopt16ReferencedObjectE]+0x0):
> > multiple definition of `typeinfo for Ipopt::ReferencedObject'
> >
> IpoptRNLP.o:IpoptRNLP.cpp:(.data$_ZTIN5Ipopt16ReferencedObjectE[_ZTIN5Ipopt16ReferencedObjectE]+0x0):
> > first defined here
> >
> C:/CoinIpopt/build/x64/lib/libipopt.a(IpJournalist.o):IpJournalist.cpp:(.rdata$_ZTIN5Ipopt7JournalE[_ZTIN5Ipopt7JournalE]+0x0):
> > multiple definition of `typeinfo for Ipopt::Journal'
> >
> IpoptRJournal.o:IpoptRJournal.cpp:(.data$_ZTIN5Ipopt7JournalE[_ZTIN5Ipopt7JournalE]+0x0):
> > first defined here
> > ipoptr.o:ipoptr.cpp:(.text+0xbb): undefined reference to
> > `__gxx_personality_sj0'
> >
> > On Fri, Sep 27, 2019 at 1:49 AM Stefan Vigerske <
> stefan at math.hu-berlin.de>
> > wrote:
> >
> >> Hi,
> >>
> >> you might want to check whether you indeed compiled Ipopt with the same
> >> C/C++/Fortran compilers that R is using.
> >>
> >> Further, this line shouldn't be in the linker flags that you posted:
> >>    -LC:\CoinIpopt\build\x64\Ipopt\src\Common\.libs -lcommon
> >> libcommon.a is part of libipopt.
> >>
> >> Also libcoinmumps, lapack, blas, metis should be picked up from the same
> >> directory where the Ipopt library was installed, probably
> >> C:/CoinIpopt/build/x64/lib, not
> C:/CoinIpopt/build/x64/ThirdParty/*/.libs
> >>
> >> Stefan
> >>
> >> On 9/26/19 11:47 PM, Serdar Altok wrote:
> >>> Hi,
> >>>
> >>> I am not sure if this list is an appropriate place to ask for help.
> >>> Apologies in advance if it is not.
> >>>
> >>> I am trying to install ipoptr in R-studio with R-3.2.5 on 64bit Windows
> >> 10.
> >>> I am following
> >>>
> >>> https://list.coin-or.org/pipermail/ipopt/2017-June/004471.html
> >>>
> >>> I have Rtools33(compatible with R-3.2.5). It comes with gcc-4.9.3 as
> far
> >> as
> >>> I understand. I do not have any other compilers installed.
> >>>
> >>> As third-party libraries I have downloaded Lapack, Blas, Mumps, Metis,
> >>>
> >>> I run configure, make, make install with no error messages as far as I
> >> see.
> >>> My makevars.win does not seem to be correct but depending on the error
> >>> messages I get, I make changes to include header files and link to
> >>> libraries. I use libraries under the mingw64 folder. I assume they are
> >>> compiled with gcc-4.9.3.
> >>>
> >>> I get
> >>>
> >>> g++ -m64 -shared -s -static-libgcc -o ipoptr.dll tmp.def ipoptr.o
> >>> IpoptRNLP.o IpoptRJournal.o -LC:/CoinIpopt/build/x64/lib -lipopt
> >>> -LC:/CoinIpopt/build/x64/ThirdParty/Mumps/.libs -lcoinmumps
> >>> -LC:/CoinIpopt/build/x64/ThirdParty/Lapack/.libs -lcoinlapack
> >>> -LC:/CoinIpopt/build/x64/ThirdParty/Blas/.libs -lcoinblas
> >>> -LC:/CoinIpopt/build/x64/ThirdParty/Metis/.libs -lcoinmetis
> >>> -LC:\CoinIpopt\build\x64\Ipopt\src\Common\.libs -lcommon
> >>> -LC:/Rtools/mingw_64/lib/gcc/x86_64-w64-mingw32/4.9.3 -lgfortran
> >>> -LC:/Rtools/mingw_64/x86_64-w64-mingw32/lib -lmingw32 -lmoldname
> >> -lmingwex
> >>> -lmsvcrt -lm -lpthread -ladvapi32 -lshell32 -luser32 -lkernel32 -liconv
> >>> -LC:/Rtools/mingw_64/lib/gcc/x86_64-w64-mingw32/4.9.3 -lgfortran
> >> -lquadmath
> >>> -lstdc++ -LC:/PROGRA~1/R/R-32~1.5/bin/x64 -lR
> >>>
> >>
> C:/CoinIpopt/build/x64/lib/libipopt.a(IpIpoptApplication.o):IpIpoptApplication.cpp:(.rdata$_ZTIN5Ipopt16ReferencedObjectE[_ZTIN5Ipopt16ReferencedObjectE]+0x0):
> >>> multiple definition of `typeinfo for Ipopt::ReferencedObject'
> >>>
> >>
> IpoptRNLP.o:IpoptRNLP.cpp:(.data$_ZTIN5Ipopt16ReferencedObjectE[_ZTIN5Ipopt16ReferencedObjectE]+0x0):
> >>> first defined here
> >>>
> >>
> C:/CoinIpopt/build/x64/lib/libipopt.a(IpJournalist.o):IpJournalist.cpp:(.rdata$_ZTIN5Ipopt7JournalE[_ZTIN5Ipopt7JournalE]+0x0):
> >>> multiple definition of `typeinfo for Ipopt::Journal'
> >>>
> >>
> IpoptRJournal.o:IpoptRJournal.cpp:(.data$_ZTIN5Ipopt7JournalE[_ZTIN5Ipopt7JournalE]+0x0):
> >>> first defined here
> >>> ipoptr.o:ipoptr.cpp:(.text+0xbb): undefined reference to
> >>> `__gxx_personality_sj0'
> >>> ipoptr.o:ipoptr.cpp:(.text+0x11e): undefined reference to
> >>> `_Unwind_SjLj_Register'
> >>> ipoptr.o:ipoptr.cpp:(.text+0xa39): undefined reference to
> >>> `_Unwind_SjLj_Unregister'
> >>> ipoptr.o:ipoptr.cpp:(.text+0xb07): undefined reference to
> >>> `_Unwind_SjLj_Resume'
> >>>
> >>> As far as my google search goes gxx_personality errors are due to
> >> compiler
> >>> incompatibility between the library and the compiler and/or is related
> to
> >>> libstdc++. However I cannot resolve the problem.
> >>>
> >>> Any help would be greatly appreciated.
> >>>
> >>>
> >>> _______________________________________________
> >>> Ipopt mailing list
> >>> Ipopt at list.coin-or.org
> >>> https://list.coin-or.org/mailman/listinfo/ipopt
> >>>
> >>
> >>
> >
>
>
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