[Clp] [SOLVED] Re: configure errors, cannot find BLAS, /bin/sh ./configure failed for Ipopt

LMH lmh_users-groups at molconn.com
Fri Sep 28 17:40:08 EDT 2018 

I decided to start again with a fresh copy of the src code. I made a directory,
COIN-CLP, this time in /usr/local/bin and used svn to download the latest src from,

https://projects.coin-or.org/svn/Clp/stable/1.16

I manually downloaded the src for Blas, Lapack, and Mumps, to their respective third
party directories and unpacked the archives based on the get files. I then ran
./configure -C from cygwin/usr/local/bin/COIN-CLP and the configuration passed. I ran
make, make text, and make install and everything seems to have worked.

I am not sure what the difference was this time, but I didn't have to make any
modifications to the src code. I have not made any further tests.

This was build using cygwin setup version 2.874 32-bit and gcc/g++/gfortran 5.3.0
under windows xp 32-bit.

I will now see if I can use the program and link to the library.

Thanks for the help,

LMH


LMH wrote:
> By building under windows, do you mean using MSVC++ or GNU under cygwin?
> 
> I have mingw32 installed in cygwin. If I do ./configure --host=i686-w64-mingw32, will
> that use the ming installed in cygwin or will that look for a separate ming
> installation? I presume if I did that I should abandon my current installation and
> start from scratch.
> 
> I am building an application under cygwin (for now) where I would like to call clp as
> a solver. Can I just download a pre-compiled library somewhere that I can link to or
> do I have to build it?
> 
> I can probably use the pre-compiled binary Clp-1.3.3-win32-msvc8 to do some testing.
> 
> LMH
> 
> 
> 
> Nils Löhndorf wrote:
>> Hi,
>>
>> I gave up building on Windows, but cross-compiling from Unix using mingw32 worked quite well, e.g.,
>>
>> ./configure --host=i686-w64-mingw32 (for 32-bit Windows)
>> ./configure --host=x86_64-w64-mingw32 (for 64-bit Windows)
>>
>> Would that not be an option?
>>
>> Nils
>>
>>> On 28.09.2018, at 19:16, LMH <lmh_users-groups at molconn.com> wrote:
>>>
>>> I tried to manually include direct.h outside the logic but I get a file not found
>>> error. I am never sure if being on cygwin means being on windows or being on linux.
>>>
>>> LMH
>>>
>>>
>>> Stefan Vigerske wrote:
>>>> Hi,
>>>>
>>>> Since you are on Windows, maybe try whether the
>>>>
>>>> #include <direct.h>
>>>> #define getcwd _getcwd
>>>>
>>>> variant works.
>>>>
>>>> Stefan
>>>>
>>>> On 9/28/18 4:18 AM, LMH wrote:
>>>>> It seems like this is a mailing list where "top post" is the proper reply method.
>>>>> Please let me know if that is not the case. I have been replying with bottom post.
>>>>>
>>>>> Hello Stefan,
>>>>>
>>>>> Including <cstdio> in the file CoinFactorization.hpp fixed the error,
>>>>>  error: there are no arguments to 'printf' that depend on a template parameter
>>>>>
>>>>> I also had to make many additional inclusions listed at the end of the post.
>>>>>
>>>>>
>>>>> I now have the following error,
>>>>>
>>>>> COIN-OS/CoinUtils/src/CoinHelperFunctions.hpp: In function 'char
>>>>> CoinFindDirSeparator()':
>>>>> COIN-OS/CoinUtils/src/CoinHelperFunctions.hpp:705:22: error: 'getcwd' was not
>>>>> declared in this scope
>>>>>
>>>>> as far as I know, getcwd is in unistd.h, which is included in the logic at the top,
>>>>>
>>>>> #if defined(_MSC_VER)
>>>>> #  include <direct.h>
>>>>> #  define getcwd _getcwd
>>>>> #else
>>>>> #  include <unistd.h>
>>>>> #endif
>>>>>
>>>>> I have added in include for both stdio.h and unistd.h as the first two lines of the
>>>>> file (before the #ifndef), but this does not fix the error.
>>>>>
>>>>> I am not sure what to do next. I cannot find any documentation on what would cause a
>>>>> compiler error for getcwd other than missing unistd.h, though it seems that in some
>>>>> cases stdio.h needs to be included as well.
>>>>>
>>>>> The error is down past line 700,
>>>>>
>>>>> if(getcwd(buf, size))
>>>>>
>>>>> Adding the includes right before the function definition for CoinFindDirSeparator()
>>>>> also does not help.
>>>>>
>>>>> Is there some location in the file where the include should be located other than at
>>>>> the beginning?
>>>>>
>>>>> Is there a different include that should be added?
>>>>>
>>>>> Any suggestions?
>>>>>
>>>>> LMH
>>>>>
>>>>>
>>>>>
>>>>> other required inclusions so far,
>>>>>
>>>>> include <cstdio> in CoinParamUtils.cpp to address the compiler errors,
>>>>>  error: 'stdin' was not declared in this scope
>>>>>  error: 'fprintf' was not declared in this scope
>>>>>  error: 'fflush' was not declared in this scope
>>>>>  error: 'fgets' was not declared in this scope
>>>>>
>>>>> include <cstddef> in CbcEventHandler.hpp to address the compiler error,
>>>>>  CbcEventHandler.hpp:137:43: error: 'NULL' was not declared in this scope
>>>>>
>>>>> include <cstddef> in IpSmartPtr.hpp to address the compiler error,
>>>>>  IpSmartPtr.hpp:340:12: error: 'NULL' was not declared in this scope
>>>>>
>>>>> include <cstdio> in IpMultiVectorMatrix.cpp to address the compiler error,
>>>>>  IpMultiVectorMatrix.cpp:254:51: error: 'sprintf' was not declared in this scope
>>>>>
>>>>> include <cstddef> in IpTripletToCSRConverter.cpp to address the compiler error,
>>>>>  IpTripletToCSRConverter.cpp:21:11: error: 'NULL' was not declared in this scope
>>>>>
>>>>> include <cstdio> in IpLoqoMuOracle.cpp to address the compiler error,
>>>>>  IpLoqoMuOracle.cpp:68:42: error: 'sprintf' was not declared in this scope
>>>>>
>>>>> include <cstdio> in IpOrigIpoptNLP.cpp to address the compiler error,
>>>>>  IpOrigIpoptNLP.cpp:296:130: error: 'sprintf' was not declared in this scope
>>>>>
>>>>> include <cstdio> in IpOrigIterationOutput.cpp to address the compiler error,
>>>>>  IpOrigIterationOutput.cpp:101:49: error: 'sprintf' was not declared in this scope
>>>>>
>>>>> include <cstdio> in IpProbingMuOracle.cpp to address the compiler error,
>>>>>  IpProbingMuOracle.cpp:143:42: error: 'sprintf' was not declared in this scope
>>>>>
>>>>> include <cstdio> in IpQualityFunctionMuOracle.cpp to address the compiler error,
>>>>>  IpQualityFunctionMuOracle.cpp:598:42: error: 'sprintf' was not declared in this
>>>>> scope
>>>>>
>>>>> include <cstdio> in IpRestoIterationOutput.cpp to address the compiler error,
>>>>>  IpRestoIterationOutput.cpp:129:49: error: 'sprintf' was not declared in this scope
>>>>>
>>>>> include <cstdio> in IpStdAugSystemSolver.cpp to address the compiler error,
>>>>>  IpStdAugSystemSolver.cpp:167:36: error: 'sprintf' was not declared in this scope
>>>>>
>>>>> include <cstdio> in IpTNLPAdapter.cpp to address the compiler error,
>>>>>  IpTNLPAdapter.cpp:411:142: error: 'sprintf' was not declared in this scope
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> Stefan Vigerske wrote:
>>>>>> Hi,
>>>>>>
>>>>>> you might try adding an include for <cstdio> in CoinFactorization.hpp itself.
>>>>>>
>>>>>> Stfan
>>>>>>
>>>>>> On 9/27/18 6:43 PM, LMH wrote:
>>>>>>> LMH wrote:
>>>>>>>> LMH wrote:
>>>>>>>>> John Forrest wrote:
>>>>>>>>>> I don't know enough about building on windows to give a definite answer but you
>>>>>>>>>> could
>>>>>>>>>> try one or two things to get something working and then improve the situation.
>>>>>>>>>>
>>>>>>>>>> a) do configure with --without-blas --without-lapack
>>>>>>>>>>
>>>>>>>>>> or
>>>>>>>>>>
>>>>>>>>>> b) go into ThirdParty/Blas and Lapack and do get.Blas and get.Lapack
>>>>>>>>>>
>>>>>>>>>> John Forrest
>>>>>>>>>> On 25/09/18 17:42, LMH wrote:
>>>>>>>>>>> Hello
>>>>>>>>>>>
>>>>>>>>>>> This is the second time I have sent this message. I think there was a
>>>>>>>>>>> subscription
>>>>>>>>>>> issue with the first message. I apologize if this is a duplicate but I have not
>>>>>>>>>>> yet
>>>>>>>>>>> received the original so I have sent it again.
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> I am trying to build clp under cygwin on a windows xp box. I have downloaded
>>>>>>>>>>> the most
>>>>>>>>>>> recent src using subversion and installed it to,
>>>>>>>>>>>
>>>>>>>>>>> C:\cygwin\lib\COIN-OS\
>>>>>>>>>>>
>>>>>>>>>>> It seemed like lib\ is where this should go, let me know if it should go in
>>>>>>>>>>> bin\ or
>>>>>>>>>>> somewhere in local\ instead.
>>>>>>>>>>>
>>>>>>>>>>> The configure script seems to run well but at the end I get,,
>>>>>>>>>>>
>>>>>>>>>>> checking whether -lblas has BLAS... no
>>>>>>>>>>> configure: error: cannot find BLAS
>>>>>>>>>>> configure: error: /bin/sh './configure' failed for Ipopt
>>>>>>>>>>>
>>>>>>>>>>> I have gfortran,
>>>>>>>>>>>
>>>>>>>>>>> $ which gfortran
>>>>>>>>>>> /usr/bin/gfortran
>>>>>>>>>>>
>>>>>>>>>>> $ gfortran -v
>>>>>>>>>>> Target: i686-pc-cygwin
>>>>>>>>>>> Thread model: posix
>>>>>>>>>>> gcc version 5.3.0 (GCC)
>>>>>>>>>>>
>>>>>>>>>>> As far as I can tell, my PATH is configured correctly.
>>>>>>>>>>>
>>>>>>>>>>> C:\cygwin\bin;C:\Program Files\Intel\iCLS
>>>>>>>>>>> Client\;%SystemRoot%\system32;%SystemRoot%;%SystemRoot%\System32\Wbem;C:\Program
>>>>>>>>>>> Files\Intel\Intel(R) Management Engine Components\DAL;C:\Program
>>>>>>>>>>> Files\Intel\Intel(R)
>>>>>>>>>>> Management Engine Components\IPT;c:\dms;c:\dms\gnuplot;C:\Program
>>>>>>>>>>> Files\TortoiseSVN\bin
>>>>>>>>>>>
>>>>>>>>>>> I believe that I have BLAS installed in cygwin but the config script cannot
>>>>>>>>>>> seem to
>>>>>>>>>>> find it. I can post the entire configure script output, or any other output if
>>>>>>>>>>> that
>>>>>>>>>>> would help, just let me know.
>>>>>>>>>>>
>>>>>>>>>>> LMH
>>>>>>>>>>>
>>>>>>>>>>> _______________________________________________
>>>>>>>>>>> Clp mailing list
>>>>>>>>>>> Clp at list.coin-or.org
>>>>>>>>>>> https://urldefense.proofpoint.com/v2/url?u=https-3A__list.coin-2Dor.org_mailman_listinfo_clp&d=DwICAg&c=Ngd-ta5yRYsqeUsEDgxhcqsYYY1Xs5ogLxWPA_2Wlc4&r=js2M0T-3OIMIVDvokcKjokJbk0F8QOCd0mT4FsVFE88&m=d0WfxyR11cyfOXA-T7rNQ2OGp4qkrePGbUjFuEMZZLY&s=xmebJ9kLTiaifIEAMtBgTDnwAcnFhj7f3H0DnzaHHrM&e=
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> _______________________________________________
>>>>>>>>>> Clp mailing list
>>>>>>>>>> Clp at list.coin-or.org
>>>>>>>>>> https://urldefense.proofpoint.com/v2/url?u=https-3A__list.coin-2Dor.org_mailman_listinfo_clp&d=DwICAg&c=Ngd-ta5yRYsqeUsEDgxhcqsYYY1Xs5ogLxWPA_2Wlc4&r=G-rWCwMCBm3eUuw9HwVHnyOeSnSun6y799F3zRs5-x4&m=15JBJE5qc5hAwj760hY9tzyTy9aRHlJEFVt9QcVSfNQ&s=jUDp_AboHjY0zT3f-ewerzcDs11isWMJKN7kHQIbklI&e=
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>> Thanks for the advice. I added the third party code as you suggested. The get
>>>>>>>>> scripts
>>>>>>>>> did not work because I had issues with wget and also some of the file names in the
>>>>>>>>> scripts do not match the files that were downloaded. I had to manually implement
>>>>>>>>> some
>>>>>>>>> of the steps in the get scripts.
>>>>>>>>>
>>>>>>>>> After running configure -C, I get a different error.
>>>>>>>>>
>>>>>>>>> checking whether LAPACK is already available with BLAS library... no
>>>>>>>>> checking whether -llapack has LAPACK... yes
>>>>>>>>> configure: Checking for Harwell subroutine library
>>>>>>>>> checking whether MUMPS is available... no
>>>>>>>>> configure: error: "No linear solver (such as MUMPS) available.  You need to
>>>>>>>>> provide
>>>>>>>>> at least one."
>>>>>>>>> configure: error: /bin/sh './configure' failed for Ipopt
>>>>>>>>>
>>>>>>>>> There is nothing listed under MUMPS in the cygwin package manager. How do I go
>>>>>>>>> about
>>>>>>>>> resolving this?
>>>>>>>>>
>>>>>>>>> LMH
>>>>>>>>>
>>>>>>>>> _______________________________________________
>>>>>>>>> Clp mailing list
>>>>>>>>> Clp at list.coin-or.org <mailto:Clp at list.coin-or.org>
>>>>>>>>> https://urldefense.proofpoint.com/v2/url?u=https-3A__list.coin-2Dor.org_mailman_listinfo_clp&d=DwICAg&c=Ngd-ta5yRYsqeUsEDgxhcqsYYY1Xs5ogLxWPA_2Wlc4&r=G-rWCwMCBm3eUuw9HwVHnyOeSnSun6y799F3zRs5-x4&m=N9fx_-dJ1omk9FGd1XVnM9jPBcJJbAO6zCf6Z2EEhBM&s=DPYXM-vxdVmLtp0X7xR6BMayOQT0RyRMiLJCz_5E968&e= <https://urldefense.proofpoint.com/v2/url?u=https-3A__list.coin-2Dor.org_mailman_listinfo_clp&d=DwICAg&c=Ngd-ta5yRYsqeUsEDgxhcqsYYY1Xs5ogLxWPA_2Wlc4&r=G-rWCwMCBm3eUuw9HwVHnyOeSnSun6y799F3zRs5-x4&m=N9fx_-dJ1omk9FGd1XVnM9jPBcJJbAO6zCf6Z2EEhBM&s=DPYXM-vxdVmLtp0X7xR6BMayOQT0RyRMiLJCz_5E968&e=>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>
>>>>>>>> I downloaded and built MUMPS Version 1.71 according to the cygwin instructions
>>>>>>>> here,
>>>>>>>>
>>>>>>>> https://urldefense.proofpoint.com/v2/url?u=https-3A__sourceforge.net_projects_mumps_files_&d=DwICAg&c=Ngd-ta5yRYsqeUsEDgxhcqsYYY1Xs5ogLxWPA_2Wlc4&r=G-rWCwMCBm3eUuw9HwVHnyOeSnSun6y799F3zRs5-x4&m=EN_1NCjY2BBHQEFERdu1TbKKkY-EoG6ZRbTa4qkkqe8&s=tUugfkR19NDQFz7VhEXwjiOwjRHbfR6PhS8vEKGWmoY&e= <https://urldefense.proofpoint.com/v2/url?u=https-3A__sourceforge.net_projects_mumps_files_&d=DwICAg&c=Ngd-ta5yRYsqeUsEDgxhcqsYYY1Xs5ogLxWPA_2Wlc4&r=G-rWCwMCBm3eUuw9HwVHnyOeSnSun6y799F3zRs5-x4&m=EN_1NCjY2BBHQEFERdu1TbKKkY-EoG6ZRbTa4qkkqe8&s=tUugfkR19NDQFz7VhEXwjiOwjRHbfR6PhS8vEKGWmoY&e=>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> The build seemed to go fine once I made the suggested local configuration changes.
>>>>>>>> When I re-ran ./config for coin-or, I still get the error,
>>>>>>>>
>>>>>>>> checking whether MUMPS is available... no
>>>>>>>> configure: error: "No linear solver (such as MUMPS) available.  You need to provide
>>>>>>>> at least one."
>>>>>>>> configure: error: /bin/sh './configure' failed for Ipopt
>>>>>>>>
>>>>>>>> I installed mumps to /lib and I suspect that it is being looked for in one of
>>>>>>>> the bin
>>>>>>>> directories. the "which mumps" command doesn't return anything.
>>>>>>>>
>>>>>>>> Should I move the mumps install directory to some other location like /bin or
>>>>>>>> /usr/local/bin, etc?
>>>>>>>>
>>>>>>>> Should I add a ln somewhere that points to where mumps is now?
>>>>>>>>
>>>>>>>> Do I have a different problem altogether?
>>>>>>>>
>>>>>>>> Thanks,
>>>>>>>>
>>>>>>>> LMH
>>>>>>>>
>>>>>>>> _______________________________________________
>>>>>>>> Clp mailing list
>>>>>>>> Clp at list.coin-or.org <mailto:Clp at list.coin-or.org>
>>>>>>>> https://urldefense.proofpoint.com/v2/url?u=https-3A__list.coin-2Dor.org_mailman_listinfo_clp&d=DwICAg&c=Ngd-ta5yRYsqeUsEDgxhcqsYYY1Xs5ogLxWPA_2Wlc4&r=G-rWCwMCBm3eUuw9HwVHnyOeSnSun6y799F3zRs5-x4&m=EN_1NCjY2BBHQEFERdu1TbKKkY-EoG6ZRbTa4qkkqe8&s=sh68nXGk7tiQUbywND54IK-RDjWW5JOtJxM9aQ1Y1Hs&e= <https://urldefense.proofpoint.com/v2/url?u=https-3A__list.coin-2Dor.org_mailman_listinfo_clp&d=DwICAg&c=Ngd-ta5yRYsqeUsEDgxhcqsYYY1Xs5ogLxWPA_2Wlc4&r=G-rWCwMCBm3eUuw9HwVHnyOeSnSun6y799F3zRs5-x4&m=EN_1NCjY2BBHQEFERdu1TbKKkY-EoG6ZRbTa4qkkqe8&s=sh68nXGk7tiQUbywND54IK-RDjWW5JOtJxM9aQ1Y1Hs&e=>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> The configure script has completed, but make fails with the following error,
>>>>>>>
>>>>>>> CoinFactorization.hpp: In member function 'bool CoinFactorization::pivot(int, int,
>>>>>>> CoinBigIndex, CoinBigIndex, double*, unsigned int*, int, int, T*, int)':
>>>>>>> CoinFactorization.hpp:648:54: error: there are no arguments to 'printf' that depend
>>>>>>> on a template parameter, so a declaration of 'printf' must be available
>>>>>>> [-fpermissive]
>>>>>>>       printf("more memory needed in middle of invert\n");
>>>>>>>                                                        ^
>>>>>>> CoinFactorization.hpp:648:54: note: (if you use '-fpermissive', G++ will accept your
>>>>>>> code, but allowing the use of an undeclared name is deprecated)
>>>>>>> Makefile:566: recipe for target 'CoinFactorization1.lo' failed
>>>>>>> make[2]: *** [CoinFactorization1.lo] Error 1
>>>>>>> make[2]: Leaving directory '/usr/lib/COIN-OS/CoinUtils/src'
>>>>>>> Makefile:360: recipe for target 'all-recursive' failed
>>>>>>> make[1]: *** [all-recursive] Error 1
>>>>>>> make[1]: Leaving directory '/usr/lib/COIN-OS/CoinUtils'
>>>>>>> Makefile:297: recipe for target 'all-recursive' failed
>>>>>>> make: *** [all-recursive] Error 1
>>>>>>>
>>>>>>> This seems like it may be a compiler version issue. I checked, and <stdio.h> is
>>>>>>> included in the file CoinFactorization1.cpp and I think that is where printf is
>>>>>>> defined. I tried including cstdlib as well but that doesn't help.
>>>>>>>
>>>>>>> Any suggestions on what to do? I am currently using gcc/g++/gfortran 5.3.0 under
>>>>>>> 32-bit cygwin.
>>>>>>>
>>>>>>> LMH
>>>>>>>
>>>>>>> _______________________________________________
>>>>>>> Clp mailing list
>>>>>>> Clp at list.coin-or.org <mailto:Clp at list.coin-or.org>
>>>>>>> https://urldefense.proofpoint.com/v2/url?u=https-3A__list.coin-2Dor.org_mailman_listinfo_clp&d=DwICAg&c=Ngd-ta5yRYsqeUsEDgxhcqsYYY1Xs5ogLxWPA_2Wlc4&r=BRcuJnQr5NAzU29t80hk2rsLc4vrlRySBDabuq0O1ZI&m=89UCf4k0W54s_nQmCeAD3McLiyMEsCLWeAp_42I0uUk&s=5tQ3MQaqtnOp5UcIsuYpn5VEVn9sxt-CPk6k15pvtFA&e= <https://urldefense.proofpoint.com/v2/url?u=https-3A__list.coin-2Dor.org_mailman_listinfo_clp&d=DwICAg&c=Ngd-ta5yRYsqeUsEDgxhcqsYYY1Xs5ogLxWPA_2Wlc4&r=BRcuJnQr5NAzU29t80hk2rsLc4vrlRySBDabuq0O1ZI&m=89UCf4k0W54s_nQmCeAD3McLiyMEsCLWeAp_42I0uUk&s=5tQ3MQaqtnOp5UcIsuYpn5VEVn9sxt-CPk6k15pvtFA&e=>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>
>>>>>>
>>>>>
>>>>
>>>>
>>>
>>> _______________________________________________
>>> Clp mailing list
>>> Clp at list.coin-or.org <mailto:Clp at list.coin-or.org>
>>> https://urldefense.proofpoint.com/v2/url?u=https-3A__list.coin-2Dor.org_mailman_listinfo_clp&d=DwICAg&c=Ngd-ta5yRYsqeUsEDgxhcqsYYY1Xs5ogLxWPA_2Wlc4&r=4W_KAPYWX_7S-OXUpUUkba9waxp6JnerRIGtanMj5yo&m=Gg4yVpwX02kEghSxjRw0D5s-Na3QSfARBZfa8T6_Eos&s=cn25VQZjuPwGBzPMnl43RSbNwlAsmRjJuJCpGyiZq0A&e= <https://urldefense.proofpoint.com/v2/url?u=https-3A__list.coin-2Dor.org_mailman_listinfo_clp&d=DwICAg&c=Ngd-ta5yRYsqeUsEDgxhcqsYYY1Xs5ogLxWPA_2Wlc4&r=4W_KAPYWX_7S-OXUpUUkba9waxp6JnerRIGtanMj5yo&m=Gg4yVpwX02kEghSxjRw0D5s-Na3QSfARBZfa8T6_Eos&s=cn25VQZjuPwGBzPMnl43RSbNwlAsmRjJuJCpGyiZq0A&e=>
>>
> 
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